Outputs

Publications

A full list of publications is available on ORCID.

Selected publications:

  • Czubala, M. A., Rodrigues, P., Ipseiz, N., Rosas, M., Dimonte, S., Pope, I., Hinz, C., Fathalla, D., Alvarez-Jarreta, J., Tyrrell, V. J., Langbein, W., Borri, P., Andrews, R., O’Donnell, V. B., & Taylor, P. R. (2024). GATA6 deletion alters lipid composition in peritoneal macrophages and promotes eosinophil survival via leukotriene E4. Cellular and Molecular Life Sciences.
    Paper

  • Alvarez-Jarreta, J., Rodrigues, P. R. S., Dias, I. H. K., et al. (2021). LipidFinder 2.0: advanced informatics pipeline for lipidomics discovery applications. Bioinformatics, 37(10), 1478–1479.
    Paper

  • Saud, Z., de La Serna, J. B., Rodrigues, P. D. S., et al. (2022). The SARS-CoV2 envelope differs from host cells, exposes procoagulant lipids, and can be inactivated by oral rinses. Journal of Lipid Research, 63(6), 100208.
    Paper

  • Chakraborty, M., Rodrigues, P. R. S., Watkins, W. J., et al. (2021). nSeP: immune and metabolic biomarkers for early detection of neonatal sepsis: protocol for a prospective multicohort study. BMJ Open, 11(12), e050100.
    Paper

  • Oruganti, S., Rodrigues, P. R. S., White, D., et al. (2023). Immune and metabolic markers for identifying and investigating severe Coronavirus disease and Sepsis in children and young people (pSeP/COVID ChYP study): protocol for a prospective cohort study. BMJ Open, 13(3), e067002.
    Paper

  • Silveira, C. M., Sousa, P. M. F., Rodrigues, P. R. S., et al. (2021). Electrochemical Activity of Cytochrome P450 1A2: The Case of the Unusual Suspect Human Cytochrome b5. ChemElectroChem.
    Paper

Selected presentations

  • Bioactive Lipids Conference (2017) – poster
  • Lipidomics and Bioactive Lipids in Metabolism and Disease Meeting (2016) – poster

Software, data & other resources

  • Long-read complement gene analysis workflows – pipelines for variant detection and structural variation analysis in PacBio sequencing datasets.

  • Pathway-based PRS analysis framework – reproducible workflows for exploring biological pathway contributions to Alzheimer’s disease risk.

  • Reproducible research training resources – GitHub and Quarto materials supporting collaborative and reproducible research practices.

Data & research contributions

  • Integrated transcriptomics and lipidomics analysis of macrophage biology
    Multi-omics analysis combining transcriptomic and lipidomic datasets to investigate the role of GATA6 in macrophage lipid metabolism.

  • Lipidomics datasets from macrophage populations
    Mass spectrometry-based lipidomics profiling of murine macrophage subsets.

Community & training contributions

  • Development of training resources and documentation to support reproducible research practices using GitHub and Quarto.

  • Participation in teaching and mentoring activities in bioinformatics and computational biology.